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There is a lot of data on HIV/AIDS available on the web from different organizations. Unfortunately much of it does not seem to be available as time series.

US Census Bureau -- The US Census Bureau has for many years been collecting data on HIV/AIDS surveys in developing countries.  The Bureau provides free access to this data base, The HIV/AIDS Surveillance Data Base at http://www.census.gov/ipc/www/hivaidsd.html .  Data can be downloaded in either ASCII or Lotus format.

UNAIDS -- provides a downloadable report on progress in the fight against HIV/AIDS and four downloadable Excel spreadsheets on HIV/AIDS prevalence, People Living With HIV/AIDS (PLWHA), HIV/AIDS deaths and HIV/AIDS indicators at  http://www.unaids.org/en/KnowledgeCentre/HIVData/GlobalReport/2008/2008_Global_report.asp

HIV INCIDENCE -- A time-series of estimates for 1991-2007 of HIV incidence at the country and regional levels is available at http://www.gri.ca/workingp.html